Xmipp

xmipp_mpi_classify_CL2D_core_analysis (v3.0)

Usage

Compute the core of a CL2D clustering

Parameters

-i <rootname>
Rootname of the CL2D
--computeCore <thZscore=3> <thPCAZscore=3>
The class cores are computed by thresholding the Zscore of the class images and their projections onto a 2D PCA space
or --computeStableCore <tolerance=1>
The stable core is formed by all the images in the class that have been in the same class (except in tolerance levels) in the whole hierarchy. If tolerance=0, then the stable core is formed by the set of images that have been always together. For this reason, the stable core can be computed only for the level such that level>tolerance

Examples and notes

mpirun -np 4 `which xmipp_mpi_classify_CL2D_core_analysis` -i 2D/CL2D/run_001/results --computeCore
mpirun -np 4 `which xmipp_mpi_classify_CL2D_core_analysis` -i 2D/CL2D/run_001/results --computeStableCore

User's comments

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