Xmipp

xmipp_ctf_create_ctfdat (v3.0)

Usage

Create CTFdat files from a selfile that contains image selfiles for each micrograph. This program is useful when interacting with other packages outputs. There are two main usage modes. In the first mode you should provide a ctfparam file with common options of each micrograph and a metadata with defocus values for each one. In the second mode you should provide a metadata with filenames of the ctfparams for each micrograph.

Parameters

-i <selfile>
Input selfile of selfiles for each micrograph
--oroot <rootname=out>
Root name for output files
--defocus <metadata> <common_ctf>
CTFparam file with common parameters Metadata with defocus values for each micrograph this file may have either a single column (defocus) or three columns (defocusU, defocusV, azimuth_angle)
or --ctfs <selfile>
Selfile of CTF param files for each micrograph

Examples and notes

Example of use: Sample at MODE 1
   ctf_create_ctfdat -i input.sel --defocus defocus.doc input.ctfparam
Example of use: Sample at MODE 2
   ctf_create_ctfdat -i input.sel --ctfs ctfparams.sel

User's comments

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