Xmipp
X-Window-based Microscopy Image Processing Package
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy. If you have used Xmipp in your work, please cite our papers as given in the List Of References.
Login
TWiki> Xmipp Web>CygWin (2012-02-10, CoSS) EditAttach

Xmipp in Cygwin

Xmipp (except the graphical part of the protocols) can be compiled and used in Cygwin (http://www.cygwin.com). You need to install a number of development packages before being able to fully compile it. Instead, you may download an already prepared installation of cygwin from xmipp_cygwin.rar.

  1. Decompress the file in some directory of your hard disk (let's say C:).
  2. Create a shortcut to cygwin shell program (C:\cygwin\Cygwin.bat).
  3. Type "cd coss/xmipp" in the shell.
  4. Update xmipp to the latest version with "svn update"
  5. Recompile with ./xmipp compile
Xmipp libraries (.dll) are left in C:\cygwin\home\coss\xmipp\lib, the Xmipp binaries are in C:\cygwin\home\coss\xmipp\bin.

For the compilation of the Java binding you need to have installed a Java JDK. The one currently used by this installation is Jdk1.6.0_30, that must be at C:\Program Files\Java\jdk1.6.0_30. To change the JDK you may use:

export JAVA_HOME=yourJDKdir

./xmipp configure

And then compile with

./xmipp compile

Print version | Raw View | 
Topic revision: r2 - 2012-02-10 - CoSS
 
This site is powered by the TWiki collaboration platformCopyright © 2008-2012 by the contributing authors. All material on this collaboration platform is the property of the contributing authors.
Ideas, requests, problems regarding TWiki? Send feedback