xmipp_micrograph_mark (only on some machines) crashes when one deletes a particles in tilt-pair mode
xmipp_protocol_kerdensom does not take the last iteration from the ML2D run
xmipp_protocol_preprocess_micrographs does not work properlly for downsample=1
xmipp_show program has problems with painting lines (for example in drwaing a profile in an image or in drwaing rotational spectra.)
xmipp_micrograph_mark program writes coordinate (.pos) files with "8bits" in the filename. This makes that the protocol_preprocess_particles.py does not find the correct .pos files
xmipp_mpi_angular_projection_matching does not yield proper classes with option -dont_modify_header. This seriously affects the option to correct the greyscale in xmipp_protocol_ml3d.py (fixed in v2.0.2)
xmipp_ml_refine3d and xmipp_mpi_ml_refine3d commands without options call to mlf_refine3d and mpi_mlf_refine3d help routines. (fixed in v2.0.2)
xmipp_micrograph_mark does not work for tilt pairs (fixed in v2.0.1)
xmipp_angular_projection_matching does not work without option -output_classes (fixed in v2.0.1)
xmipp_protocol_multires.py the Analyse Results button does not work (fixed in v2.0.2)