Xmipp

xmipp_metadata_convert_to_spider (v3.0)

Usage

Extracts information from a Xmipp selfile into a Spider docfile

Parameters

-i, --input <input_file>
Input file: metadata, stack, volume or image.
--mode <mode=overwrite>
Metadata writing mode.
where <mode> can be:
  • overwrite Replace the content of the file with the Metadata
  • append Write the Metadata as a new block, removing the old one
-o, --output <output_file=>
Output file: metadata, stack, volume or image.
--action <action>
Choose one of the following choices
where <action> can be:
  • extract_selfile <style=new> Valid styles are new or old The old style is 0=not selected, 1=selected The new style contains the numbers corresponding to the selected images
  • extract_angles <ang1=psi> <ang2=rot> <ang3=tilt> Specify the order in which the angles should be written
  • generate_count Generate a count file with as many numbers as enabled files in the metadata
--disregard_disabled
Disregard disabled images from the metadata

User's comments

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