Xmipp

xmipp_metadata_plot (v3.0)

Usage

Plot some values from metadata.

Parameters

-i, --input <metadata>
Input metadata
-x, --xlabel <label>
Label for X axis data
-y, --ylabel <labels>
Labels list for Y data
--title <title=>
Plot title
--xtitle <title>
Plot x axis label
--ytitle <title>
Plot y axis label
-c, --colors <colors>
Colors for each plot
-n, --nbins <nbin>
Create histogram with Y data and nbin bins

Examples and notes

Simple plot of label "sigmaNoise" from metadata
xmipp_metadata_plot -i results.xmd -y sigmaNoise
Additionally take values for X from other label and set title
xmipp_metadata_plot -i results.xmd -x iterationNumber -y sigmaNoise --title "My figure" 
Plot different labels and select colors:
xmipp_metadata_plot -i results.xmd -x iterationNumber -y "sigmaNoise sigmaOffset iterationNumber" --title "My figure" --colors "yellow blue green"
Plot using dots:
xmipp_metadata_plot -i results.xmd -x iterationNumber          -y "sigmaNoise sigmaOffset iterationNumber"         --title "My figure" --colors "yellowo blueo greeno"
Plot using different line styles:
xmipp_metadata_plot -i results.xmd -x iterationNumber          -y "sigmaNoise sigmaOffset iterationNumber"         --title "My figure" --colors "yellow-- blue. green.."
Colors, markers and style lines are described here: http://matplotlib.sourceforge.net/api/pyplot_api.html#matplotlib.pyplot.plot

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