Xmipp

xmipp_micrograph_particle_picking (v3.0)

Parameters

--input, -i <...>
Input files to show
--memory, -m <mem=1g>
Memory ammount for JVM
-o, --output <directory>
Output directory for load/save session data without updating model.
--family <family=>
Specifies family to work with. Not mandatory
--mode <pick_mode=manual>
Mode in wich Particle Picker will be used
where <pick_mode> can be:
  • manual Enables manual mode. User will pick particles manually.
  • supervised <thr=1> <fast=True> <incore=False> Enables supervised mode. User will use autopicking. Then review/correct particles selected. Particles from manual mode will be used to train software and switch to supervised mode Autopicker will use number of threads, fast and incore modes provided
  • review <file> Enables review mode. User reviews/corrects particles set provided on specified file without updating model.
  • readonly Enables readonly mode. User can see the picked particles, but cannot modify them.
Example on software usage can ben seen here

User's comments

%COMMENT{type="tableappend"}%