Xmipp

xmipp_pdb_analysis (v3.1)

Usage

Analyze a PDB file and produce different statistics

Parameters

-i <file>
PDB to study
--operation <op>
Operation to perform
where <op> can be:
  • distance_histogram <fileOut> <Nnearest=3> Compute the distance histogram between an atom and its N nearest neighbours

Examples and notes

Compute the histogram of interatomic distances
xmipp_pdb_analysis -i mypdb.pdb --operation distance_histogram distance.hist

User's comments

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