Xmipp

xmipp_phantom_transform (v3.0)

Usage

Apply a geometrical transformation to a phantom description or PDB.

See also
phantom_create
volume_from_pdb

Parameters

-i <file>
Phantom description file (.descr) or PDB (.pdb)
-o <file=>
Phantom description file (.descr) or PDB (.pdb)
--operation <op>
Operation to perform
where <op> can be:
  • shift <x> <y> <z> Shift vector
  • scale <x> <y> <z> Scale vector
  • rotate_euler <rot> <tilt> <psi> Rotate with these Euler angles
  • rotate_align_with_z <x> <y> <z> Align (x,y,z) with Z
  • rotate_axis <x> <y> <z> <ang> Rotate degrees around (x,y,z)
--center_pdb
Substract the center of mass from coordinates. Only valid for PDB files

Examples

   xmipp_phantom_transform -i model.pdb -o shifted.pdb --operation shift 1 2 3

User's comments

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