Xmipp

xmipp_volume_enhance_contrast (v3.0)

Usage

Enhance volume contrast by applying a non-linear transformation to gray levels The contrast enhancement is based on an evolution of an article of Sean Matz and is further explained here The algorithm detects the molecule borders and applies a nonlinear transformation of the gray values

See also
volume_correct_bfactor

Parameters

-i <file>
Input volume
-o <file=>
Output volume
--removeBackground
Remove the noise of the background
--alpha <a=0.01>
Confidence interval for background identification
--lowerIntensity <intensity=0>
Only process if the gray value is higher than this value
--saveMask <filename=>
Filename for the background mask

Examples and notes

xmipp_volume_enhance_contrast -i volume.vol -o volumeEnhanced.vol

User's comments

%COMMENT{type="tableappend"}%