Xmipp

xmipp_volume_segment (v3.0)

Parameters

-i <volume>
Volume to segment
-o <mask=>
Output mask
--method <method>
Segmentation method
where <method> can be:
  • voxel_mass <mass> Mass in voxels
  • dalton_mass <mass> <Tm=1> Mass in daltons Tm is the sampling rate (A/pixel)
  • aa_mass <mass> <Tm=1> Mass in aminoacids Tm is the sampling rate (A/pixel)
  • threshold <th> Thresholding
  • otsu Otsu's method segmentation
  • prob <radius=-1> Probabilistic solvent mask (typical value 3) Radius [pix] is used for B.C. Wang cone smoothing

User's comments

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