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X-Window-based Microscopy Image Processing Package
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy. If you have used Xmipp in your work, please cite our papers as given in the
List Of References
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(2005-03-28,
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E
dit
A
ttach
2Dinterpolation
3DReconstruction
3Dinterpolation
Adapt_for_Spider
Add_noise
AddingExtraProtocols
AdjustVolume
Adjust_CTF
Adjust_surface
Adjust_volume
Align2d
Align3D
AlignementParametersNote
AnalyzeClusters
Ang_distribution
Angular_align_dual_tilt_series
Angular_assign_continuous_v3
Angular_assign_for_tilt_series
Angular_class_average_v3
Angular_commonline
Angular_continuous_assign_v3
Angular_discrete_assign_v3
Angular_distance
Angular_distance_v3
Angular_distribution_show_v3
Angular_neighbourhood_v3
Angular_predict
Angular_predict_continuous
Angular_project_library_v3
Angular_projection_matching_v3
Angular_refinement
Angular_rotate_v3
Aph2img
Append_docfile
Applygeo
Apropos_v3
AquI
Are_different
Art
Assign_CTF
Assign_angles
Assign_multiple_CTFs
AuomatedGuiMakerClass
B00xmp
BackupTODO
BasicUssage
BatchSOM
BigRefactor
BlueGeneAdaptedLaunchParralelJob
BoxerToMark
BoxerToXmippMark
Browser_v3
BuildingWithSCons
CTFParamOldNew
CTF_profile
CTF_viewer
CenterImage
Centilt
ClassAverages
ClassAveragesVsReprojections
Classify_analyze_cluster_v3
Classify_compare_classes_v3
Classify_evaluate_classes_v3
Classify_group_v3
Classify_kerdensom_v3
Classify_mpi_cl2d_core_analysis_v3
Classify_mpi_cl2d_v3
CoSSSmallTricks
CodingGuidelines
Combine_stats
Common_options
CompareClassAveragesWithReprojections
CompareVolumeT
Compare_selfiles
CompileStatically
ComputerComparison
Conventions
ConvertImagesToXmipp
ConvertingFrealignXmipp
CorrectAllCoordinates
CorrectBorderForMark
CorrectCoordinates
Correct_Amplitude2D
Correct_Phase
Correct_bfactor
CorrectingMisalignmentOfPDB
Correlation
CountryProcedence
CpSel
CreateMask
CreateMaskFromMap
CreateProjectionLibrary
CreateSurface
Create_micrograph
Create_phantom
CrystalProcCNB
CrystalStuff
CrystalSurface
Crystal_angular_projection_matching
Crystal_convert_volume2description
Crystal_idft
CtfFind
Ctf_correct_idr_v3
Ctf_correct_wiener3d_v3
Ctf_create_ctfdat
Ctf_create_ctfdat_v3
Ctf_create_ctfdata_v3
Ctf_enhance_psd_v3
Ctf_estimate_from_micrograph_v3
Ctf_estimate_from_psd_v3
Ctf_group
Ctf_group_v3
Ctf_phase_flip_v3
Ctf_show_v3
Ctf_sort_psds_v3
Ctffind2xmippparamcsh
CtffindToXmippCtfParam
CumbersomeGreyScaleCorrection
CygWin
Data2Img
DebuggingProfiling
DeconvoluteCTF
DefinedMacros
Deform
Denoising
DenoisingMicrograph
DetectMissingWedge
DevelopersStuff
Dfawdca
Dicotomica
DicotomicaFunction
DirectoryHierarchy
Dm32raw
Do_SelFile
DocFile_Histogram
DocFile_Select_Subset
DownloadForm
DownloadTemplate
DownloadXmippApp
Draw_surface
EGEE
EclipSe
EgeeMpiJobs
Enhance_PSD
EquivalentEulerAngles
Ervffweaf
EstimateTheCTF
EstimatingNoisePowerForAGivenSNR
Euler
EulerAngles
Evaluate
Evaluate_FSCs
Example2PBS
Exp_Shift_Computation
ExpertOptionsScreenShot
FAQ
FCMeans
FFT
FKCN
FSOM
FileDat
FileFormats
Filter_Projections
FindCenter
FindCenter3D
FinisterraePbs
FinisterraeQsub
FinisterraeQsubpy
Finisterrae_info
Flip
FormatConversion
Fourier
FourierFilter
FourierTransform
FromXmippToVariance3D
FullDocumentation
GenerationPhantoms
GenerationandVisualizationofPhantoms
Generationofcrystals
GettingStarted
GettingStartedWithProtocols
GettingStartedwithXmipp
Git
Gnuplot_mplot
Gnuplot_mprint
GuiIdeas
GuidedDemos
Header_assign
Header_extract
Header_print
Header_reset
Header_v3
Headerinfo
HexDumpF
Histogram
HowManyReferenceProjections
HowToCompileXmippIndependentPrograms
IDR_ART
IFFT
Image_align_tilt_pairs_v3
Image_align_v3
Image_convert_v3
Image_find_center_v3
Image_formats
Image_header_v3
Image_histogram_v3
Image_operate_v3
Image_rotational_pca_v3
Image_rotational_spectra_v3
Image_separate_objects_v3
Image_sort_by_statistics_v3
Image_sort_v3
Image_statistics_v3
Image_vectorize_v3
Img2Data
Img2Jpg
Imgconvert
ImportingExporting
ImproveParameterIncoherence
InDevelopment
Infogeo
InstallXmipp09OnCygWin
InstallingTheSoftware
IntegrationWithTomoJ
Introduction
KCMeans
KerDenSOM
KerdenSOMClassification
Kkpy
KnownBugsAndVersionHistory
Lattice_vectors
ListOfPrograms
ListOfProgramsv3
ListOfReferences
Logpy
ML2DClassification
ML3DClassification
ML3DClassificationParameters
MLalign2D
MLalign2D_combine
MLrefine3D
MPIProjectionRealShears
MRCProcessing
MachinesList
MaeritTips
MakeCTFGroupCsh
Makespectra
ManualParticleSelection
Mark
Mask
MasterGuiScreenShot
MeanShift
MeetingsXmipp
Metadata_convert_22_emx_v3
Metadata_convert_to_spider_v3
Metadata_histogram_v3
Metadata_import_v3
Metadata_plot_v3
Metadata_selfile_create_v3
Metadata_split_v3
Metadata_utilities_v3
MicrographDownSample
MicrographPhaseFlipping
Micrograph_automatic_picking_v3
Micrograph_mark_v3
Micrograph_particle_picking_v3
Micrograph_scissor_v3
Micrograph_tiltpair_picking_v3
Microscope
MlAlign2DCshScript
MlAlign2DCshScriptLsf
Ml_align2d_v3
Ml_refine3d_v3
Ml_tomo
Ml_tomo_v3
Mlf_align2d
Mlf_align2d_v3
Mlf_refine3d
Mlf_refine3d_v3
MoreInfo
Morphology
MovingParticles
MovingParticlesCSH
MpiRun
Mpi_MLalign2D
Mpi_MLrefine3D
Mpi_art
Mpi_fourier
Mpi_mlf_align2d
Mpi_mlf_refine3d
Mpi_projection_matching
Mpi_run_v3
Mpi_wbp
Mrc_create_metadata_v3
Multi-resolutionRefinement
MvSel
NewNamesProposal
NewTreeProposal
Nma_alignment_v3
Normalize
NoteOnCtfGroups
NoteOnDocsCompilation
NoteOnMlfConvergenceBehaviour
OldCompilationMareNostrum
OpenDX
Operate
OperateMetada
OsType
PBsTipsFinisterrae
PCA
PDB2descr
PDBPhantom
ParallelPage
ParallelProgramming
ParticlePicker
PbsScript
PbsTips
PbsTrueno
PbsTruenoIa64
Pdb_nma_deform_v3
PeDo
PhP
PhantomTransform
Phantom_create_v3
Phantom_project_v3
Phantom_simulate_microscope_v3
Phantom_transform_v3
PlattformArchitecture
PreprocessMicrographs
PreprocessParticles
Prog_Create_Surface
ProgramsToPort
Project
ProjectPCA
ProjectTomography
ProjectXR
ProjectionMatchingRefinement
Projection_Real_Shears
Projection_matching
Projection_neighbourhood
Projections_explorerj_v3
ProtocolGuiScreenShot
Protocols
ProtocolsIntercomunication
ProtocolsLogsFile
Protocols_v3
Pyramid
QsubPyBsc
QsubPyCrunchy
QuerySQL
RadonTransform
RafaUsefulScripts
RandomConicalTilt
Random_phantom
RangeAdjust
Raw22spi
ReName
Recons_test
Reconstruct_art_pseudo_v3
Reconstruct_art_v3
Reconstruct_fourier_v3
Reconstruct_wbp_v3
RecordingTheScreen
RegisterMaillist
RemoveOpenMPIWarnings
Resolution
Resolution_fsc_v3
Resolution_ssnr_v3
RetrieveSVN
Reverse_endian
RmSel
Rotate
RotationalSpectraClassification
Rotational_spectrapy
RunKerdenSOM
RunMpiProgramsWithoutRepeatingThePassword
RunningXmippOnBlueGeneMartinsried
RunningXmippOnCrunchy
SI1
SOM
SSNR
Sammon
Sample_size
Scale
ScalePos
ScaleShifts
Scissor
ScripTs
Segment
SelFilespy
Sel_stats
Select_images
SelectionFileSpidertoXmipp
Separate_objects
SeriesRemoveFluctuations
Shift
Show
Show_v3
Showj_v3
SjorsUsefulScripts
SortByStatistics
SortImages
SortImagesBasedOnDocfile
SourceforgeReleaseSystem
SpARMA
Spe2spi
SpectraProcessing
Spi22ccp4
Spi22em
Spider_headerpy
Split_selfile
Spots2RealSpace2D
Stacks22images
Statis
Statistics
SubmitMpiJobOnJumilla
Subset_selfile
Surface
Symmetrize
Symmetry
SymmetryAnalysis
TerraeCommand
TestWiki
TestingVM
TheCNBCorner
Threshold
Tia2raw
Tiff2Raw
TipsVermeer
ToDoProtocols
ToPDB
ToPhantom
Tomo_align_dual_tilt_series_v3
Tomo_align_dual_tilt_v3
Tomo_align_refinement_v3
Tomo_align_tilt_series_v3
Tomo_detect_missing_wedge_v3
Tomo_extract_subvolume
Tomo_project_v3
Tomo_remove_fluctuations_v3
TowardsXmipp3
Transform_Add_noise
Transform_add_noise_v3
Transform_adjust_volume_grey_levels_v3
Transform_center_image_v3
Transform_downsample_v3
Transform_filter_v3
Transform_geometry_v3
Transform_mask_v3
Transform_mirror_v3
Transform_morphology_v3
Transform_normalize_v3
Transform_range_adjust_v3
Transform_symmetrize_v3
Transform_threshold_v3
Transform_window_v3
TrimAliFile
TutorialPhp
Unbend
UsefulScript
UserSupport
UsingDoxygen
VersionControlWithSubversion
Visualize_FFT
Vol2Jpg
VolSampler
Volume_align_v3
Volume_center_v3
Volume_correct_bfactor_v3
Volume_enhance_contrast_v3
Volume_find_symmetry_v3
Volume_from_pdb_v3
Volume_reslice_v3
Volume_segment_v3
Volume_to_pseudoatoms_v3
Volume_to_web_v3
Voxels22Blobs
Wbp
WebAtom
WebChanges
WebHome
WebIndex
WebLeftBar
WebNotify
WebPr
WebPreferences
WebRss
WebSearch
WebSearchAdvanced
WebStatistics
WebToXmippMark
WebTopicCreator
WebTopicList
WebUtilities
WhatToSave
WhatsNew
WikiNews
WikiPagesOfNextVersion
Window
Window_micrograph
WishForMark
WishList
WishListRewrittingQT
WorkingWithProtocols
WritingDemos
XMLInterchangeFormat
XMLProtocolLog
XMask
XmippBackup
XmippMainClasses
XmippOverview
XmippPreprocessing
XmippPythonization
XmippRaw
XmippVM
XmippVersion
Xmipp_preprocess_Acsh
Xmipp_preprocess_Apy
Xmipp_preprocess_Bcsh
Xmipp_preprocess_Bpy
XrayPsfCreate
Xray_import
Xray_import_v3
Xray_project_v3
Xray_psf_create_v3
xray_psf_create_v3
See also the verbose
WebIndex
.
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Topic revision: r2 - 2005-03-28 -
TWikiContributor
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